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Showing posts with label abiogenesis. Show all posts

Tuesday, June 21, 2011 ~ Have your say...

Abiogenesis and the Origin of Life: Part 2

This is Part 2 of our short series,  "Abiogenesis and the Origin of Life".  Read Part 1 HERE.


How do scientists think life began?

First, it must be noted that like many aspects of scientific knowledge, understanding the processes and mechanisms of abiogenesis is far from complete.  Research is ongoing, and there is lively debate about the specifics of certain hypotheses concerning the origin of life.  However, the scientific community of biologists and biochemists as a whole accepts a number of facts, some to a farther extent than others, and the purpose of this article is to illustrate some of these facts and interpretations. 

It is often assumed that the prebiotic (that is, before the first cell) environment was rich in organic materials that life eventually co-opted for its own purposes.  Through research such as the Miller-Urey experiment and its recent re-analysis, there is evidence that the prebiotic environment contained a complex mixture of organic compounds, including nucleic acids, the building blocks of DNA and RNA, amino acids, the building blocks of protein, and phospholipids, the molecules that compose cellular membranes. 

Phospholipids are particularly important molecules in the proposed models of abiogenesis.  These molecules have the ability to spontaneously form bilayers in aqueous solutions.  Cellular membranes in cells living today are composed mostly of these so-called lipid bilayers.  However, bilayers within a large volume of water do not typically cover a flat area; instead, they will form tiny spheres called vesicles.  Vesicles have the ability to grow by coming into contact with smaller spheres composed of fatty acids, called micelles.  These phospholipids and the structures they form are important – they provide a separation of environments between internal and external, while also allowing simple molecules to pass through. 

A simplified model of abiogenesis proceeds as follows: 
  •          Some sequences of nucleic acids have the ability to self-replicate; that is, these sequences are able to catalyze (speed up) the reactions that enable them to make duplicates of themselves. 
  •          A self-replicating nucleic acid within a vesicle would have ample resources to produce more self-replicating nucleic acids. 
  •          As more nucleic acids replicated, producing even more copies, the vesicle would grow until mechanical forces divided it, and it would then be able to reform spontaneously into a number of smaller vesicles containing fewer copies of the nucleic acid. 
  •          Although these self-replicating molecules had the ability to copy themselves, much like modern cells this ability was imperfect – chance copy errors would provide the newly separated “protocells” with sequence diversity. 
  •          It is thought that this form of replication, combined with copy error, continued over a relatively long period of time, and inevitably lead to the natural selection of useful features of the genome, including the ability to encode for genomic function with genes and their regulatory sequences. 
  •          Once the functions considered necessary for life have been encoded, the system of self-replicating nucleic acids and phospholipids is considered to be alive, and abiogenesis is complete.
From there, evolution continues to take its course, and the diversity of life engulfs the planet for millions of years until one day, a species will evolve with the mental capacity to ask the question, "How did life begin?".

References and Further Reading:

Monday, June 13, 2011 ~ Have your say...

Abiogenesis and the Origin of Life: Part 1

One of the greatest mysteries on Earth is the origin of life.  Abiogenesis is the subject of biology and chemistry that focuses on the emergence of life from non-living matter. 

While many aspects of abiogenesis are not yet fully understood and many of the specific hypotheses of how life arose are undergoing a lively debate, scientists researching abiogenesis agree on several key points regarding the origin of life. 

First, what is “life”?

Scientists agree that even cells, the basic and simplest unit of life, are staggeringly complex.  Cells living today demonstrate this complexity through the structure of their genome and the often visually astounding molecular “machinery” made of protein and sometimes also ribonucleic acid (RNA).  In order to understand how life could have arose, understanding towards what biological end these molecular machines serve and, just as importantly, how these molecular machines are constructed within the cell is a useful endeavor.

Some properties of life are common throughout all organisms (viruses excluded):
  •         Cells require a source of raw materials and energy, as well as a method to utilize these sources for their own growth and development. 
  •          Regulation of a more or less steady internal state is just as important to the cell as acquiring raw materials; this regulation is called homeostasis. 
  •          Cells also demonstrate the ability to self-repair, and can detect and respond to signals in the outside their environment. 
  •          Finally, cells are able to reproduce and grow, and reproduction affords a population of cells not only a means of providing a new generation, but also the opportunity for these populations to evolve through variation and natural selection.

Two of the most important properties of cells with respect to abiogenesis are replication and metabolism.  Metabolism may be divided into two more or less distinct pathways.  Catabolic metabolism is the cell’s use of complex materials, such as sugars, lipids, and protein, to produce energy by breaking these materials down into their simpler components, such as water and carbon dioxide.  

Anabolic metabolism is the cell’s use of simpler materials, such as amino acids and nucleic acids, to construct complex molecules called macromolecules (literally: large molecules) that provide function to the cell.  The four major classes of macromolecules are carbohydrates, which range from simple sugars to complex polysaccharides, protein, nucleic acids such as DNA and RNA, and the diverse class of macromolecules called lipids, which includes fatty acids and cholesterol.

Where did the raw materials for life come from?

There are two possible sources of raw materials, also called organic compounds (“organic” in chemistry means “carbon-containing”).  These compounds either originated on Earth, having a terrestrial origin, or they originated in space, having an extraterrestrial origin.  These two sources are not mutually exclusive, however, as some organic molecules could have originated on Earth while others originated in space. 

Extraterrestrial organic molecules could have been delivered by objects falling to Earth, while organic molecules of terrestrial origin may have been produced by a number of energy sources on Earth.  Ultraviolet (UV) light, electrical discharge, geothermal vents, and impact shocks of extraterrestrial objects falling to the ground may have all played a role in the origin of organic molecules on the planet.


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